Scaffold Ga0210391_10000069

Overview

Basic Information

• Taxon OID: 3300021433
• Scaffold ID: Ga0210391_10000069
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118682
• Total Scaffold Genes: 104
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (78.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000626	Metagenome / Metatranscriptome	976	Y
F001727	Metagenome / Metatranscriptome	645	Y
F004921	Metagenome	418	Y
F005371	Metagenome / Metatranscriptome	403	Y
F006427	Metagenome / Metatranscriptome	373	Y
F081590	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210391_1000006921	F001727	AGG	MDGGARPPHRSFRLSPVDRLGRRISPSVLDAAEEVGRRAIEHAEREHIDPAVAATLLEEAAATVSRALDAKRHRTQNAVRDLPSYLFLAFIRRVNRTKKRQLLLEDAVRVRSAGSHNSTDPEAELELKILVDELLTRCDPVTRDMFYRRIQGFSWKEIGLYYSISGHAAESRFNQALHKVGVRLGLRSKL
Ga0210391_1000006922	F006427	N/A	MRMRIKDRAALEKKNKELLDFARSYLSEAFPNPDRQGCPPDAALRSLAFYPNESEPTVTEHLAVCSPCFRRYAELLAESKSQTEAQRGTSWRRVSGWTRAHPVLAGTAALCILLIAIGVGLLLQGIRQPNTPPIDTHRKPNPTEPLNPTVAYSPFNLDLSALSPVRGSESATGTQLRVPVPSSPLELTLTLPLASAEGRYDLRLTGGSETVWSKSAQAHLLKGKTLIQVEADFRQIPPRNYNLEVRSSSGIRLVQPLSIQAASPKSGEQKP
Ga0210391_1000006939	F000626	AGGAG	MPIVKKAPGIMTREVKLEEPVNELLEDYARFIESNADHVINAVLKKVLWRDQDYRKWREARRTAQSGTDKAQPTEARGRA
Ga0210391_1000006950	F004921	AGGA	MSKKKSKRVMVDAIPIKPVSAAEHRRLDRRIKKKYEKVRKRYREVHGKRVDWISHWVEEGILFLTVRFTDGKCFSITYSPCAILDSVDFSDMSTGDEVILKQYYQRPNL
Ga0210391_1000006964	F005371	GGA	MELLAKFRIGALLMAATASSALFAQNKGSDKPQNPSNIPDARQIVGQSIVAAEHSWQARNEYVYIERDEDRRLDSAGKVQSQNVDVTRMTLINGIRFEQLMEHNGQVPSAEDQKKSGLDAEKLKHETPEEKAVRLQKDQENRSFLHVLLEAFDFRLVGEETLAGRPTYVLEATPHPGYRASGKYAKLLSRVEGKLWVDQQDFGWVKVDGEVTQSFSMGLFVARVQRGSHIILEQTCLGDAVWAPKRLEVRASAKILFLKSLELDRILTYSDYRAAADGAFSVKK
Ga0210391_1000006977	F081590	GGCGG	MNKKTLLFFSLLCFCLQLPVSALAQCKDHLCQNLQNLLFAAVTDFREFRTNASPGPDLSVAGTRIPCQMTAWANNVPMYICYAQISYMSAETWYANMVESVRILQPTWHLKIDSPVADHFVDAGPPDCEVPATEGPYLGHCPLHLQITKQTDGTAKVYLWMSSLSSPYLVNRPPGPPLKAAPAPIAGGCDDFCQGLKKVFEARTSAFEQLRAAKATGGVSDATIKLGGAAECDVNVTPKLHSSELGAQYVCYWLEASAPAADTRFRDLVARLQVLEPSNWSIREDDQSEELAGAKVKAWCAVAPDAKQEMCVYLSGESVGMHIKSWN