Scaffold Ga0210391_10000053

Overview

Basic Information

• Taxon OID: 3300021433
• Scaffold ID: Ga0210391_10000053
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133045
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (85.60%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001095	Metagenome / Metatranscriptome	780	Y
F001292	Metagenome / Metatranscriptome	729	Y
F036819	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210391_10000053115	F001292	GGAGG	VRRSSEVTLTANEEGCAERLARFFPRATAVRVPVQITSLGAGSTRLREATVVEFGGSEHAIFLSSLPLEFDDRVRIERDRNGGTADATVIAVQYHEGRKAVAVRFLQGPCAWVTKP
Ga0210391_1000005336	F036819	N/A	MQTLLVEAFGPLVVAFVVFVAVVAVRRLVHQLRNRLTPEQIQAARDSFRSRLIHPNASQVEEGIAASLPERLIALYDDHQTVLAEQIEIRRPPANPENPLEPQNPAEWIEAFLPLDLESQKYTLDLAAQGWGKGFCFATDGEGNFYWIPAGETRQTDAPVFFAHTDPLANEQVAASLDEFLSWPRVIHSSETEAEK
Ga0210391_1000005375	F001095	AGGA	VQTDKLEDGRLETMKKRRRKTLDVGVEARRAARNSGIAPAATRVIADKRKHPAKHKKKWLEKEAE