Scaffold Ga0210391_10000004

Overview

Basic Information

• Taxon OID: 3300021433
• Scaffold ID: Ga0210391_10000004
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 574141
• Total Scaffold Genes: 464
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 374 (80.60%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F003375	Metagenome / Metatranscriptome	491	Y
F013955	Metagenome / Metatranscriptome	267	Y
F035986	Metagenome / Metatranscriptome	171	Y
F085956	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210391_10000004263	F000678	GAG	MDKFEEFGRRIDEEVSRLKKINNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKLSEAAGWIESRNSTRTEKESPKPPPQS
Ga0210391_10000004296	F085956	GGAGG	LRCRVCGIDYGVSHECSGLSPFMTLEEVAPPPSELRPFYYIRMAFNIVRWDDMAIRRASRDPNALVYGAALSAVSAALIFLVTALPGMLAHEGRTTGTIFWGLLLGLVFFWTYMAIIAVVQIGLCHAIAKIFLGATGTLAGVMRPLFLGWFVNVLILIPVVGVFAVGIAWTAVLMLVFEEIDGIGRMQAFLISAGINAAFIAMEILVPH
Ga0210391_10000004332	F013955	GGA	MAAHLRRTCCLASLFLCLAAAAQSQSPAPPATKSQKKSKHPKPVETSIQNYYGGVFLVGDGGIPNGPCFRINGRVTSSGFFNELKSYDNDDGTIFRLGAAEVTQFPDKLLLSMTIRDQPCGFGLQPVGTGVYLTQEAMHSMKLTLYWKHGVDLRPAEKVAVVRVSVDPIEPYATNLAAELPKRYLWSYEFGIPAGGVPLTDSLVLVFRTADGRIAARVAARL
Ga0210391_10000004394	F035986	GAGG	VRAEDIVGISFFALLICAIVVTLCGSRTILAPRQQAAWRGWGLSLISVALVGFGLVNFQLIHSSPRPVVEGNLWDIRQEFKNGSTRFMITDATGQAVMILCSHRGPGFVQGERARVRYVAYNNKLVELDMLSGPYGAWHLRESSGEVGYWAWVVIGLIFGLLACRQLAKTRPGQTPA
Ga0210391_1000000463	F003375	AGG	MYSAAGLAISCPEHARLESEFIEARDRMRGLIRLRKLEPAEERQLAVRVAMAIARLKEHVAGHGCERRG