NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10042931

Scaffold Ga0210384_10042931


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10042931 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4142
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1004293110F044617AGGAMNTSPRESRQMPTVTAMTAEERRKLDERIRDKQQKLRNKYPEIYGKVVDWIHHSVEDGTLYICIRFQDKTDFALEFSPQIVRVGTELCDSATGDFDVIRNHYQEERE
Ga0210384_100429315F007233GGAGMANRKQKEYKRQLNLDTFSDGIKGRVLEAISISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0210384_100429316F033134AGGAMKQEQESKELITFNSLHIEVLGPRALGNSQPAIRGVTEFLHAVELDVRNLLRERAETSPILEGFRLRFG
Ga0210384_100429317F037842AGGAGGLKQKTVKARGEGVEYQALIGKVIRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIGFSIDPELSTVKGGNIVRWRQLKTRPVMRRVARK
Ga0210384_100429319F065986GGAMSNIAKRQGRMIRRGKEVRFGSVHIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCAKISPSLKRFRLISIRTQNRRKFNVGGQRN
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