Scaffold Ga0210384_10041784

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10041784
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4205
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F002523	Metagenome / Metatranscriptome	552	Y
F016609	Metagenome / Metatranscriptome	246	Y
F027041	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_100417845	F001356	AGG	MAKSKASPPTDLRYRQVRVDALNKGRRGKHHDLVAGILQELEPLSPGSAMEIPLADVGGIGLANLRSAVHRAATSRGLQIETLADEKNFYVWNKKSDTN
Ga0210384_100417846	F016609	GGAGG	MTEYKWHEVYKAALLETDWSKMEERINAAEAALHARKHEFDLNHGGEPEENRAIEGAFGGLSVLREDAARWREKRAS
Ga0210384_100417847	F027041	AGGAG	MYRLPQNYYQIYRVDHKRNREQMVDEVEGLHEAEKLIEKYLRNMTASEVRDEISYYRSTLSSRVPKMFGLSRAS
Ga0210384_100417848	F002523	AGCAG	MLVIISLSRLDNDRIEIGVARPQHDSNPTHNYTSQKEARAVLSDFGISEELMASHLKLLAQMGASEQLKFPPMDIPQNELLSKGFRL