NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10007037

Scaffold Ga0210384_10007037


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10007037 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11902
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000850Metagenome / Metatranscriptome861Y
F002523Metagenome / Metatranscriptome552Y
F004910Metagenome / Metatranscriptome419Y
F005165Metagenome / Metatranscriptome410Y
F022989Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_1000703712F002523AGCAGMLVIVSIRRLDNDRIQVGVARPQHDSNPTHNYPSEKEVRAVLSDFGISEEIMASHLKLLAQMGAVEQLKFPPMDVPQHELRSKGFRL
Ga0210384_1000703713F004910GGAGMAISQRLVDPSREFKVSVRYGWQESYHAALLETDWKTTVELVQKAESEIHRRRLELAQDRNGTHEERDALVTAVNGLRVLRMDAAAWRERQNLK
Ga0210384_1000703714F005165GAGMNTNDANHPEWRQLCQAALCETNTVKLLERIAHARNVVLDRIEDGYSKPPTSERAALRDALATLDSLRRITERQNGYQSKAS
Ga0210384_1000703716F000850GGAMKKPELTDMAWLGPKQEMDRASHRFGKCSECHEIICVEKAVTDGPSTQGKTSEMLDEAFRAHVKLKHSEDFNLAAIPATERHQA
Ga0210384_1000703717F022989N/AMSSSLEDRVRLLTDRAIAATTQSELDAILPELKGAIRDYVCYLRAIAVETVPEAFGTQSKTAA
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