Scaffold Ga0210384_10000671

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10000671
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51286
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (76.12%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036462	Metagenome / Metatranscriptome	170	Y
F038776	Metagenome / Metatranscriptome	165	Y
F042607	Metagenome	158	Y
F071164	Metagenome	122	Y
F091043	Metagenome	108	Y
F094469	Metagenome	106	Y
F096147	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_1000067114	F091043	GAG	MDTTHRNITNFFEEMLDDLKCQRDTKAYIISIYGKYKTAQFDLSKDSVTLQFAQARSNQDFLTYQNLGDWIFFANTLAPDHLRFASKDYYDTVARLSYYSCYRLINRQWKLFEELSDNFLTLEHQVKNKLSVLSFQNSNF
Ga0210384_1000067133	F096147	N/A	MSIDGLKEEYVPKYSANGEQKFYRYLLVSALNKLVLIERGLYKGTTPDLEFLDYHDRFIILYRREGDEIYLRVARLLRKAAHKIYRIMLKKKMTVANAKFLNLV
Ga0210384_1000067146	F042607	GAGG	MSIKVIDNKRVDMTDDEWAMYLKIVKSYTTVNNKGEDLFKNLFETGPDGIIIFLKPPSTFRTSFEVFLFLMSLMQHQHLRLMHQQVDDVCQQMKEKLKDK
Ga0210384_1000067147	F036462	AGAAGG	MTQQVRLSDFLGTELEEDFANFDMTEIEQVLVNLRDIDAIDLSHVEMLQQQSLRGADVIAGYLGKMVKTIGYLEAKVNSTKNKVSLEYSAPDGSRTTVDMKKWAGESSPEVEAVQIKLAYAKGSKLVLDRKYEILVKAHHHFKDIAAGLRKTILGYSQSTTNEPVPNGYE
Ga0210384_1000067157	F038776	AGTAGG	MGDVMSKNSIDYSSLETKIYKRAYKLSDVKDRLETVAFDIVRFKDSDKAADLWQVQNAEDGDYIVAMYQSEEEEKTASWGVTVSKTAGDLQVSYKGDPLVSISSGKLGIPPSELYKIEEYLPAKLAANKKLVKALLNELPASAKNAVLNKYPELV
Ga0210384_1000067160	F071164	GAGG	MRIAEMLTAIAAWLESPNNEALLLAEADEDCMKVVAESCTLAAALLKNAAEQVDTMEAPEESKITPESIDELANLAAAFDASGDPQLKKQASVLDELLLSIAAPPNAYAERKDLQEQRLIEIGKKYNDPRKELHEVNKIGDSEKGIDKSKMTEKYRILEAPLSTRYCPDHPGVQIARIGEHMWQCEMDKKSYNFETGFELNNGSKVPGGDVAQQTQGVNVPYHAIFDTREGRLGYNKP
Ga0210384_1000067162	F094469	AGGA	MNKPTYKKILEHPDKDEIINKLVIGQPLNDIHDWLKGKYTNVSEAKFVLSEKILKSFQHTYLDFYNDVLTDLSKTKTALATGTVDQLELAVKKSPAYKDAMIRTAGTELDIRQMVHNLCVNVESRLSQVFDEIQEDPRNINTKVDRLLIDYAEVLGNILEKYYKFTEAPADQIIQHNVTLQVVDQHISVFHDVIKEVLSQMDLETSLYFMEVFNTKMAALKVPVPDAQPTQEMKLAEARLLNETINQKINQP