Scaffold Ga0210384_10000633

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10000633
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53083
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (60.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_100006331	F000838	N/A	ARAIRITSRIVFFVCGSLSLLTGAPYAMLQGAELPVQSEWVIFVVALALVGVFSVAVAVLPRSWIAQVCKKDRDDERLFSTPLKLLGGFAAVFYFVALVAYQAPRRWNLDPQLMFSVCPMYFLKRAFDPPLATILFLLAPMNAAVYGSLGLTLGYAWLAFGKRTSS
Ga0210384_100006336	F012141	GGAG	MSGERYWVWVMVRLAVGVAIVAWAASYLTTGSGEKEFQKTLEALKQVHTFRVAFAATPRDQHNEMLWEVDCNRNLLHYRWRVYKTGSDTNEMSRDEVHVATEEYDRQSDGSWSKARFLARGDRPASWYCGALAQGNDNGLMPQIATMIKRGVLQKGDKKTVSGVRCREWLVTMKGGTSGLEHDTVCLGLNDHLPYEMTVDWQQSRSTFSDYNAAISFDMPEAAAPMTSETTPSN
Ga0210384_100006337	F047844	N/A	MRSLFSIRGALAAAACVICLGAALIAQDSDSPNSLGDVARQTRAQHATSSAEKSGKAQDLVDEMQQEQEAADNAPTGFKNYNAGDYRLFVPFPYSLEGRDDGGAVLLGSRLGVTNTEVMAGTPVPIPSNLDDDDLLNAARQLASMHGQPGNCYAIKPNSRKKYRCSWQNSPVLLGHQVFGSMEVIVGSNSLIPVMCVSPDDVHQPCVVYDTWGNNTCSDRERQLYGWDHRKAQAAADASYKDERTTAQMCEDIIYPSIQLKEEIVVHPASISENKVPKPAAETTPLREHAAGEPESQQSQGPSLAELARQTRQAPHEKAQAKLDNAEGMSVAPAGYQPFILVYCLNPQQCAEASVVIPEKAEVVSRVNGQYIFKASLNGEPVMLYAGPADVNAPYRSLTDPDYIRMRDLANANGWSREKPESASTQELTIEDRRALMTRFRYQRDQKRWWIGERVLIANQGSEFLVGCAAPEEHFADAEVLCTTLVHSLRLP
Ga0210384_100006339	F087522	GAG	MRRLNSIFVTGLALAFCAGPAVVRVRAQARANEHKLLLRADMKAGEVLRYELEAAGSFLPIADASGAILSPPRGPCDYALASIVTLRPQAPDKDGNTPVEARYSETRVTSVRCALFSAADFQKRLAALQSSPIMFRVGPHGETDLSIARDGYFKYWDGGDLLRKVTQDLLQTEFSPQPVTAGAAWKPRGQFAYSRDHALKDLELSGADLRFRNLVQVDGKSCAWVTSQYIFSPIDLPAVGTASGGRTVPAAGNNAVAAVLRISLLLDPATDHVAWLHRSQTIDNKLTLASPYDDSDPADPPEPDSQDSENPMPDLSSMRSDNPGRYPFMTFHFQEEARARLLPDQRSVEWLAALKRFEATPEPESGTIPVPVTKTLLPNPMILAAKPAVVKRATRLVVDSDTLVATPAGFTRYEKGLCRDAWFCATASLALPGEVQVSEDTPLRTVYLAQTSDLLVSITVGPALDRRPRGLTEDEELKKQANYYLENYVWLAAKPGIGTSFSSATLDGYPGLITDFSATQRDLANIHGVLALILTPWGKVVPVSCSSDHAPSAALQSLCEKVITSVSLRR