Scaffold Ga0210384_10000070

Overview

Basic Information

• Taxon OID: 3300021432
• Scaffold ID: Ga0210384_10000070
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 148628
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 118 (83.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010343	Metagenome / Metatranscriptome	305	Y
F013345	Metagenome / Metatranscriptome	272	Y
F030512	Metagenome / Metatranscriptome	185	Y
F073958	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210384_10000070126	F010343	AGGAG	MQRKLVWVEEQGFQGWGCSECAWGFSPSGAPIGNSLDEMKENYERRRDKDFAAHVCAENPKPKNKMVR
Ga0210384_100000702	F030512	AGGAG	MHTAVKECRLTPRETLSEPVLVRPFDPLFPEEICTTANVSRSGLYFLTPTKHYFVGMNVIVALNFGQDDPIHREQIGDVVRVEELDEDKRGVAIRILMHNNPGIYSGT
Ga0210384_1000007026	F073958	GAGG	MKTPLLMRTFIVMLALEWELCSQDPFVFCYRMTVEPARDFLGRFGARG
Ga0210384_1000007029	F013345	AGGCGG	MNDETIRREMIDESRAAYILGLPKQQLREICEMSGLGRLEEGTTAARLVFTYEELYRLCRLIVGPTS