Scaffold Ga0213866_10206585

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10206585
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1017
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010571	Metagenome	302	Y
F051564	Metagenome	144	Y
F052274	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_102065851	F010571	AGGAGG	MSMNTRQAIYIENLYEGFYEKHYKELSKTSDDVDWIEQEAMRLAEIDLDNFEMEG
Ga0213866_102065852	F051564	GGAGG	MSIPKQMIKEWCETYDEAIETLDYLANRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDNE
Ga0213866_102065853	F003976	AGGAGG	MSRLYNDYYFEKQDILDTLDKLNMNVRFLNAWIKEPLGLENAKYVLEKNANQEFKWFSREMVKELVEEETYES
Ga0213866_102065855	F052274	GAGG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYD