Scaffold Ga0213866_10160912

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10160912
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1185
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028320	Metagenome / Metatranscriptome	192	N
F066583	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_101609123	F066583	AGGAG	MKYNKAGIDFENCYVCGTKLKEVTHKRNIQRRCKSCIYHGVGEVKPVVEEGNEDDWSVLDDPKAVNEKDYGRVFREPTQLHTGHSSLSELVGGSSNYNHIHGPSRDGVRYSNRKKKE
Ga0213866_101609125	F028320	N/A	QMANQYRKVINITLFPNSEGKATHGNSKWTPYKDGNPADIHLRKDARYSVKLFGNDDGSLGLAISEVVQGVYTDSISDGVSQPGMRTLAQSIDPPKQSPISALKDELDDEVPF