Scaffold Ga0213866_10094655

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10094655
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010318	Metagenome / Metatranscriptome	305	Y
F032867	Metagenome / Metatranscriptome	179	Y
F051564	Metagenome	144	Y
F059345	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_100946552	F010318	GAGG	MNVDSDKPKYLECIYEAPITFDLEELGIDWDNIKNYHVKYGTLYVEFKDGNSGQYDGDIGDPDYKWAEQESIFTEDWDLVEGLNXXTEHYTKN
Ga0213866_100946553	F032867	GAGG	MDELEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDECX
Ga0213866_100946558	F059345	AGGAG	MSMTKEKLESIHCALQELQQEFNIPDDNLHLEDAYKFTEDLREEHFNKRRELXATK
Ga0213866_100946559	F051564	N/A	TLDYLANKSIPRQMLKEWCETYEEAIETLDYLANRSVGTAEEEIKESLEDFFIDNGLMSEEEFRKEILXAXLKKN