Scaffold Ga0213866_10021921

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10021921
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3795
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F007025	Metagenome / Metatranscriptome	359	Y
F013505	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_100219212	F005382	GAG	MDKTTLIKKFIYEAGSSIVSVQFIKADGSVRSLQFNPRDSKEIKGTGTAMKKPSIVRCRDFRIARTAGEGAWRSFDCERVISVKANGQALSF
Ga0213866_100219213	F013505	N/A	MKHYPSYEARLEADRQAQHSGYGIQQYMLADGSRKWEAYGWERITEFQLQTTSYGIFDHKWQAERYLNNVLYG
Ga0213866_100219216	F007025	GAGG	MILVDFFSEDCCKGTELVEGWYWYDDADDNAVGGPFISEEAALKAAFDGHGW