Scaffold Ga0213866_10015848

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10015848
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4542
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010532	Metagenome	302	N
F015793	Metagenome / Metatranscriptome	252	Y
F032867	Metagenome / Metatranscriptome	179	Y
F046985	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1001584811	F015793	GAGG	MVNIKTFEDRYNNNKKFHHVNLMGLKFRVANNKRSKRKSNRVFYSTSRGIVFNLLPSRYLCLITK
Ga0213866_100158482	F010532	AGGAG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMNVSDVDIIHRIEEHMSYMVSSYLTKSYEGISIDEQALRQA
Ga0213866_100158483	F046985	GAGG	MIVDTKEELNEWWLEEFGVDVDVSKYVEVRVPAKTYAMLVQIGIFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLREYPFARGYQQQAEKIWNNILKHLKAFNPVYAEELKNKLFKRRVA
Ga0213866_100158484	F032867	AGGAG	MDELEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDDS