Scaffold Ga0213866_10010031

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10010031
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5832
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005816	Metagenome / Metatranscriptome	389	N
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1001003111	F035770	N/A	MAEYAYASHLRDNGHTGEIIYPNKDTSKQHTDGSWLLLTITGERLGTVSPNGTVRLT
Ga0213866_100100314	F005816	AGGAG	MDLTNFNVDASNEGKSVVEPGRHVLHWQGEEEELIEGRNGWRGCKMYFEVDGAGIRLNHTFTVGHDNPKYVDSGVKSMLLMAQAMGLKEPPKDTSTAFMGKSVSAELIKDENGYLKINEDWGRTWQATNVKPEPVNDNIQTGPSQADLDSVESTDASDDDVPF
Ga0213866_100100318	F022856	N/A	MIIVGNFRDILGKQRDKLYPQMPSTRPLEGHISIHIHMYKRANPLRGFDSLGGSARTLGE