Scaffold Ga0213866_10006418

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10006418
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7523
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F013531	Metagenome / Metatranscriptome	270	Y
F019114	Metagenome	231	Y
F048285	Metagenome	148	N
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000641810	F048285	N/A	MKINQEQLEKATAFILETNKYIYEQAEELAKQHLEGEDNKSFKSRVKRYEAESKETLMHFTDEVTAWAECEKNYPLMDFIEKFFRVKKGYKNELY
Ga0213866_1000641812	F019114	AGAAGG	MKHLKGRMQEARDEFYRNKRNRGFMAFWWSDPLHYVLGLEVAIADASSKSINFEAIVKLLPNSMGSRSTVATVLEDFVARKYMCKKVGKDRRERVYTICPEAMKLMSAWFTKRDFSIKAV
Ga0213866_1000641817	F097272	GGAGG	MDLTEFGLDNIEAAGSSGGGERVKPGRYNLEYAGSEMIEGRNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLMKMLNAMGVSSMKNTDELLGKKVEGELVVGDKGYLEIADNFGNNWKQYGTTLAKENVDPKEVLPKEEIFPSDVDDEDDLPF
Ga0213866_1000641820	F013531	N/A	EQPLLSFQDKDGNPREIFEKDLTDRTKPLVAEISKDLQAEQQLMEAYQLATKTVHHMESVRKNVANSLEKLEAELPPYKKPVKIEGVTKEVN
Ga0213866_100064185	F002399	GAGG	VSIPKTRTHKSVIGQLRKKYGLKDNTPIHKVEQIMTPKDWQAFSEALTFPNGKPTQRGK
Ga0213866_100064188	F004603	AGGA	MIFSININGSIIDWCYTINNQEKQYHQTWIPKLKDILIVTKDLNGLTVSEVKKTILEDIQPDIQMVRDNTNKKARARRGKNV