NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213866_10000749

Scaffold Ga0213866_10000749


Overview

Basic Information
Taxon OID3300021425 Open in IMG/M
Scaffold IDGa0213866_10000749 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25311
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (92.16%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F020172Metagenome / Metatranscriptome225N
F022785Metagenome / Metatranscriptome213N
F058153Metagenome135N
F064230Metagenome129Y
F064767Metagenome / Metatranscriptome128N
F095283Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0213866_1000074917F095283AGGAVPKTKAQLNRQMRQEGLRDFLSKQKLIEKVIDIAQDLTDPDKEYDALDVQRMRTAAELNLKLASKFLPDLKSTELTGPEGGDLVIAVQRKRFDGDD
Ga0213866_1000074918F064767GGAGMDIDEYIVAVRAADSMAKAWRSDVAILSNLKVVRLDEAKGTILEVVRWDL
Ga0213866_1000074921F020172AGGAVKRAMFCTRNGEKHIENLDQVCVLIGRLKGLTESEYLDLCAINKLENARALEMAKHYPSH
Ga0213866_1000074927F064230GAGGMTLKSYLPQMKCTECYKIMVPQFSKEYPHKLDGWSCDCGNSEKAILRERQYTREDDGNNQQWASGQGI
Ga0213866_1000074928F017135GAGGMIPIISCPLPGGGQALIKTQDIGGATSGKNPKECDVYVLGWAANGITVDLSLDDFAEIWVSALFDEGSNDIEIIFTPDEVH
Ga0213866_1000074937F058153GGAGMARFDFYEILINHPSWEENYHDITDPEIRREIMCDVEEISSEIAPTAMQQTGSEIEWVDLIFNDEVDPAVVVQKTREMLWNYSESMIVGLIEDEAEKHARDMGEDYQ
Ga0213866_1000074941F022785GAGMSIERSVAKLEAQQEAMAQDVSEMKSALTSIAKTLQDLSSMEQRQVHLTETAARAHKRIDEIQAVLKDEVKNHEKRIQAIEISIAKNQWIERIIMAGVMAVIGLWIKGGI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.