Scaffold Ga0213866

Basic Information
Taxon OID	3300021425 Open in IMG/M
Scaffold ID	Ga0213866_10000674 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021425 Open in IMG/M

Scaffold ID

Ga0213866_10000674 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26501
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

26501

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F001942	Metagenome / Metatranscriptome	613	Y
F008281	Metagenome	336	Y
F008346	Metagenome	335	Y
F013639	Metagenome / Metatranscriptome	269	Y
F018155	Metagenome / Metatranscriptome	236	Y
F036651	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000067421	F001942	N/A	VPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFIFAAENSRSQSETYKHYTCDILAFVFFDDDKKHIMFKANTSSQNYFTFDKKSITDDMELESLKETLDSLSSVPVLNPII
Ga0213866_1000067425	F008281	AGG	MNLMCNTKHGAIEWRWKESGQPSPEYKSLNHQWWIPKKSEFKLVTKVDPTIKQEIKDEIWEDMQSDFEYQKGIYKIHKLNKRESK
Ga0213866_1000067427	F036651	AGGA	MREITLNEVGQTKPLILNIRKIRGYYRDVFTGETKVQTENREYVVRDSLYEIGYLMGVNKXK
Ga0213866_100006743	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQSSLWDARQGLIDTWFDIDSGDAYSINIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDRLIVDAITTDQGNVLKPQTAFTVRTVEPDNTGLISLVLEEE
Ga0213866_1000067431	F018155	GAG	MGQHKAAVEKRRKELEAEKLDKQIKTYYFQKGAGKHYREITYMSGKVVRTEFND
Ga0213866_1000067438	F008346	AGGAG	MPIKLKPSAKIRDRATGKTTIEHYYLKCMTLKELNDYIESPSSKKKVIQKCKNEIIRREKXIKLCYRKLLIFQL
Ga0213866_1000067441	F013639	GAG	MKIDKQKLEQKIKEGKSSHDIAMTYDVHPSTIRRKAKALGLKFQTQSHWRKGXGYQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213866_10000674

Overview

Ecosystem & Geography

Associated Families

Sequences