Scaffold Ga0213866_10000588

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10000588
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28478
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (81.40%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F020172	Metagenome / Metatranscriptome	225	N
F064230	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000058829	F017135	GAGG	VIPIISCPLPGGGQALIKTQDIGGATTGKNPKECDVYVLGWAANGITIDLSLDDFAEMWVSALFDEGSNDIEIVFTADELH
Ga0213866_1000058830	F064230	GAGG	MTLRSYLPQMNCTECYKTMVPQFKKEYPHKLEGWSCDCGNSEKAILRERQYTREQDGDDQQWASGQGI
Ga0213866_1000058836	F020172	GGA	MCETVKRAMFCARNKEQHIENLEVVCTLVGRLKGLTQSQYLDLCAKDKLENARTLYMAKHYPA