Scaffold Ga0213866_10000486

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10000486
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31993
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (57.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001881	Metagenome / Metatranscriptome	622	Y
F007265	Metagenome / Metatranscriptome	354	Y
F065729	Metagenome / Metatranscriptome	127	N
F087124	Metagenome	110	Y
F091953	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000048621	F065729	GGAG	MKKLEFRPITITYVRTMMFTPTSETFEDWDVEPTQESVYYWAVEEFLSTMEEEAKDGEWRHFTVITQDQPPVEVEWEDT
Ga0213866_1000048629	F001881	AGGAG	MSDRGKEFMNSIWEARNSGADTEEKLVSAILVTLSENVQYFTAQDGRIVLDKNDILLLAEEIVQ
Ga0213866_1000048634	F091953	GGA	MVELLATTIISCSDAFRIVNRIGNAIGLSYQQKIEVIQVISQHIPTCPIKIISDERPKSS
Ga0213866_100004867	F087124	N/A	MNLTFKQHILLLAGLTLLCDEAAKVNNSEMQHEILELSDIIQEYAERKQRADERRNAKS
Ga0213866_100004869	F007265	N/A	MTFQPYNVVPGTQIIHSITDCYEFSDEVEGCTHTVKLQADNGGVYLESTGKQHDSGHRGITEYISIGNKELAIVVAKRILELYGVN