Scaffold Ga0213866_10000362

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10000362
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37498
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (46.15%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024929	Metagenome	204	N
F027500	Metagenome	194	N
F031876	Metagenome / Metatranscriptome	181	N
F046078	Metagenome	152	N
F070680	Metagenome	123	N
F079993	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000036225	F027500	N/A	MDWTSIDIGTLMGVTHWKGQARQETLLVKPRGNKGAYYYGDKVVRSKCSAILHIIARSEFIVMERGMGARANVVNAQAKLRGYIEGLCDFNKVQAREILPSEWRRPIKEHLGVSWPKKSEDQKALAQQVVKQLYNLDVSEDEADSICIGWSAMRLGYINSNQ
Ga0213866_1000036228	F024929	N/A	MKPVITKISLINDDTESPYLNNPIFSCIEVGPDDEAAGSFLRIKLTNETGERLQPGEITLDWNEWDSLIKIVEQHRSQWDWE
Ga0213866_1000036245	F031876	N/A	MSEDQRYCTVPVAEYDNINMEQVAATYGREVVLNPPIVANGTERLIGFCGNKPTTLYGYTTYTDTQWQAEVSNPESAYYIDPDIL
Ga0213866_1000036246	F070680	N/A	MEIDANVVFAGIGACAVVGGAIMAYGELKTKVVGLMQRADSAQKAREKLFDKVSVVEEETKVQRVQIDDIRQNNNKLFELVEGQSRTLGEIKQELAVIISKLKSHG
Ga0213866_1000036248	F079993	N/A	MKKKLLCLTLFAFTGCSTLNNAINTLPGYEFEQFDYSRTGNITSTSLSASNAKIENNMLIVEKAHVTHSNPLFGVNISVQGLKRPAAASTTGGVAPHGND
Ga0213866_100003625	F046078	AGCAG	MTTWFRTLHVFWCGIEFGVRKSDMDALANGTMWDTAYLEVRAVCEHRPKLHYWTKMVLGCEKHYLNLGIFAVCWGSDIVEV