Scaffold Ga0213866_10000181

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10000181
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52427
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (20.97%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020156	Metagenome / Metatranscriptome	225	Y
F042280	Metagenome / Metatranscriptome	158	Y
F066686	Metagenome / Metatranscriptome	126	Y
F082523	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000018116	F066686	N/A	MKELQDIINDLQARLAIVGGGRIIITSDHVSIRLGKEHEYFEVQEQSPFDSPSEVDVEMHKQMYNY
Ga0213866_1000018142	F042280	N/A	MGFMKITNKWEETFEVNVGDYVGFKCDIEQIGKVKQIQRRGALIVENKNGFDGDYIGGDTEALVGFDEVWKENY
Ga0213866_1000018143	F020156	N/A	MQKTYRKILYEELQRLVYNENFKLDYANDILQLFDDEIEDGHTDITAYNKAMQDIDNAQNGEWDL
Ga0213866_1000018156	F082523	N/A	LPNYSTENFQKSLKTKTLNKRLDKQFGFCHTLRMSGEAHSAFFRRTNKTQEDNWELCEIFERWIMNSPVKKHMKFYPKHIGQVELYEKGGENVPKWMEKYLRFDGTFELMISTHESWYEDADIYESFDRADSFVSLAKKFAEQYNLKYYTRGIYELEDELEEKSLTTSKN