Scaffold Ga0213866_10000164

Overview

Basic Information

• Taxon OID: 3300021425
• Scaffold ID: Ga0213866_10000164
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55533
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (54.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F007569	Metagenome / Metatranscriptome	348	Y
F065729	Metagenome / Metatranscriptome	127	N
F085690	Metagenome / Metatranscriptome	111	Y
F087124	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213866_1000016439	F085690	N/A	MNYLITYYYKNDLEQRHQRHKTMAVAIATANLLIAHGHYVIDSITTEYGVEE
Ga0213866_1000016440	F000919	GGAG	VRFRNIEFRWSKCNNKYELVKWNTPTEDSFFKDPTCYVIAFFDKGSEGYDMRTIGNRFFEDKDAWVVGKYGLEFLNEIFQIEQDEEELK
Ga0213866_1000016442	F065729	GGAG	MKKLEFRPVTITYVRTMMLTPTSETFEDWDVEPTQESVYEWAVEEFLTTIEEEAKDGEWRNFTIITEDQPPVEVEWGDEDT
Ga0213866_1000016452	F087124	N/A	MNLTFKQHVILLSGLTLLYDSAEKVNNSEMQHEILELSDIITEYAERRQRADERRNAKS
Ga0213866_1000016456	F007569	N/A	MGMNFTDEQYKLIYNAVRRYQIEKTILNSEEYNECDVILTDLFPYVYTQQQEQPT