Scaffold Ga0194117_10479752

Overview

Basic Information

• Taxon OID: 3300021424
• Scaffold ID: Ga0194117_10479752
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 558
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -5.7366
  • Long. (^o): 29.9194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F036564	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194117_104797521	F036564	AGGAG	MKLGKVCLTLDYIVDMDNDEMVKHAVESLYEDLMQGVKYGNISDWIDVVEDKTATE
Ga0194117_104797522	F032548	N/A	MKKKQNKDMNKAIKLLEELVYQADEDCPHDCRTIHFTNALEEASEFIKEYKNSQ
Ga0194117_104797523	F027756	N/A	YRIKKMKLEDLVDRKILYLNYPVNKYSIQEGKVSEVSPAKKCIKINSDWYLVDNIRVIELFGENDRPKLGFGLPKNEKEAK