Scaffold Ga0194117_10358976

Overview

Basic Information

• Taxon OID: 3300021424
• Scaffold ID: Ga0194117_10358976
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 675
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -5.7366
  • Long. (^o): 29.9194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034849	Metagenome / Metatranscriptome	173	Y
F102613	Metagenome / Metatranscriptome	101	N
F102847	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194117_103589761	F102613	N/A	TVFTASAATFGINTMKKGDDEEHKAPEARREEFVVAPPEPPAPEVTLEERVEALEEGQVQPRTGA
Ga0194117_103589763	F034849	GGCGG	MIPLILASIFTATPMGPGQVPHFMRTCDRIRIHDAKTGTNWILCINGVYQFPKNGRPQDRSLPQYKQQLI
Ga0194117_103589764	F102847	N/A	MEFIAFLIVGYVEISPGQCQLEYLRYNDIHSLVIPCHENGTLQKGSVG