Scaffold Ga0194117_10319407

Overview

Basic Information

• Taxon OID: 3300021424
• Scaffold ID: Ga0194117_10319407
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 729
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR_3 bacterium SM1_77 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -5.7366
  • Long. (^o): 29.9194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057945	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194117_103194073	F057945	N/A	FESFTMDRNCLMTEFRWERFGDKYYYHDVNTGKIVGSVNKIALQEIWIALIFTGEYSFTIQDEKHLGQYINMDFAQRAVEFFWNREIRTLLE