Scaffold Ga0194117_10255047

Overview

Basic Information

• Taxon OID: 3300021424
• Scaffold ID: Ga0194117_10255047
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 844
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -5.7366
  • Long. (^o): 29.9194
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039606	Metagenome / Metatranscriptome	163	Y
F043904	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194117_102550471	F043904	AGGA	MKLTAEQISAGWNTVESQANSASDLSDFSAVSPPSEFRMYEPLADAAHSFVRWAQSPHERIYLGLPQIDSEMRGIAAGEMSMMIGYSHGGKTLLLLHSLLQNRDKHVAMFIPDEPRQLVLIKLTCMCHNIDARELERLVAIDDRDAIDLLRQTAEEHFP
Ga0194117_102550472	F039606	N/A	NLVNREADTDAKLGEFTTLFMSVRDIIFDAIGAGSNDAEIYELAKQTFNATTVSSPTIVGELQIVGQQHGEIPDWLIKACKRDGITKVYDNRDGLAVNPKRPWFKAVDADKAYWAPRTRT