Scaffold Ga0194117_10006495

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194117_10006495

Scaffold Ga0194117_10006495

Overview

Basic Information
Taxon OID	3300021424 Open in IMG/M
Scaffold ID	Ga0194117_10006495 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10237
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (22.22%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location Name	Tanzania: Lake Tanganyika
Coordinates	Lat. (^o)	-5.7366	Long. (^o)	29.9194	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034542	Metagenome	174	Y
F097165	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194117_100064951	F034542	N/A	PVARKRGSDNFGFRDFKATNPVNQPRTIRGSDNAGELLRPLPFKRRFRPVTGTKNFSLLSDYDYASLWARWRRGYELAMYSQQAYEGLTYSFKYFVSGAPGVGTFLPGIAFMYPTTRADMRMWMVGIRPRDSFNFLNFGYSVVSVTDYDANTYAVRLSSNFGAPISFFAGEVLSNRYNADGTEKAYGYNNYTVTAVGINGVPQAPGFLPIFNTLFLSHTEANSWAVVNSTTMAVPATGPPAVGEYLTTEMRSQCTCPDFLAREGFNLYEASLRRKYPFTRVQNTNPGFYDAGPDSTVRQVPSNDNPGFARTFGFIYLNEIYNIPEYTEAVYSDPNVFYYQPRWCKHIYAAMWDLQLRFGQTTTTSMWLAQPNDEPMNEYYREKFEIDLAKQTDFFKRERNLVWWQRYSPAKNDMPTHMMYPDMYNMMGKTLNFGNINSLTPMEAENFEMFTIEEFDPFAPINFDQLQVYDGGTYANGVLVSQPINTFVGGQYANGVLIPPAGFPSLINGGTY
Ga0194117_1000649518	F097165	N/A	MTLAPCPTHGSTYRALHEPNFRGIVDVIELLLDTVSGVGTTSYSRCATGYTPNFDGVVRALEDLK

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