Scaffold Ga0210394_10183298

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0210394_10183298

Scaffold Ga0210394_10183298

Overview

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10183298 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1823
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004122	Metagenome / Metatranscriptome	452	Y
F006481	Metagenome / Metatranscriptome	372	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_101832982	F004122	N/A	MRYEWQSFLGLVPVLDLRPVDPILYQRCQAAVWRSRGKRTISRTELQQAAGLHFQEETLDFDLLVAQLVREEILEPILSSPFHFQIRRRNWTNPESAYAADDRLSLSAISREEQTARFRMPGVLGARISDLRLSERRVQQIREQRDELQRIYEATWLELENAIGSKAAEAIRKSVEETTEADAVQLDLPLEKQRNFDLEGEARCNQ
Ga0210394_101832983	F006481	AGG	MNSVVDTIVAAPASSEAQLPSRVLEIRPEESKLVCVGADGREFALSRLAGSNVRIGDEVLVPASTGTATADTEVYIRKPSLRRADVYQVKAGYAGLPKLDKREEPFVRVQVAEGQLGINAIHIPCPVIRDYFFAANRRASWPSQPTFYYVLRLPQDVTYKELRLAYRLRRMELEKQNASKAELATIERAYNMLADPDIRGVYDALIKTSTIPVPFPYSGFGSLLVQGERSAESGVFFANR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.