Scaffold Ga0210394_10023611

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10023611
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5629
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002076	Metagenome / Metatranscriptome	596	Y
F013823	Metagenome / Metatranscriptome	268	Y
F037404	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_100236112	F002076	AGG	MQKHYRQCLDKLAGDAPERKAALIRSLLPGIEAAVNSGQSLKKIWEALASEGLQMSYHSFHKAVWRARRRKPTAASNWGKQDKPSEAQALPETKVEEVEGRDPFANLKRLEENRPGFHWRGTRNMKTPVDRAEDSNDKHNR
Ga0210394_100236114	F037404	GAGG	MTPVVALDLKRITAEVAARHGMLLRPDDPAMLLVTMNEVVLQQVIGSIETRAEEIVAGIEAGFRSAQREALGSVEREARKAGVAVREEIQKDIDAGRLHARELIVELNRAYTRSAVRRWVAMGVVFASGLLVLGIALGMLLARVLK
Ga0210394_100236118	F013823	AGGA	METRKQQSGIDSVHDTSAFACGLFLTIAAIVAGAGLSLLPGMGVSGMVFPGAERVALAVMVLGFSGVLVTTLLNLSDATRRTLVVLFAAALLCSGFVALVVWFAVSGASGGWS