NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10017126

Scaffold Ga0210394_10017126


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10017126 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6827
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008273Metagenome / Metatranscriptome336Y
F011792Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_1001712610F008273GGAGMNTNNAATRQDLIENSVDQQISSLTNSAASPEQLETLLNSEPDHDLIEWPRQYLETYLDSDPTGRVPLNGEQLQDVLEAAFDRDGTTARDYLEELKRDRGPLSLGDSTLQITTKRDEGKDCGYELLFDPADSQDLKHLIEQLDIRQWERNNAQMTPGLETKPDIDRRETTASVATHQPGSAAVEIHDKISGTDVRKLLGGGELPAGLQAALKKMGPDALVKDAQTDSGVYRGAVIGETDKKLIQQITSRTVVLHPKDLLDKLPSVGDNVRIAYTNNSARVLSVKERSKAQELGR
Ga0210394_100171263F011792GGAMNQLVNSALLAFYSKGGESKLKEPAKGRGSSVHSYDTMSEAERRELHQRLAELSAMQSVPFEAEEPNGSYYEYDRNLKATVKVTPDGERTPVEKLETSFEPTLRKAPRKIAHEEITT

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