NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10012440

Scaffold Ga0210394_10012440


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10012440 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8280
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014286Metagenome / Metatranscriptome264Y
F020888Metagenome / Metatranscriptome221N
F099102Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100124407F020888N/AMMREKPISRYLQNVLDALPSAFAQLVFLSSLRDPYTGRYLHEGWASVSTPEEVNMALRGTHRSVFEAVVNLSLMDLSRELRRHFNSLGQVEVRVANLWLETEPYYEMIPEGCSLLARRFFISQFRSALEVLIQAPGWTYLEEPASSPLPQPDLEHRPRWLN
Ga0210394_100124408F099102N/AMFLSDAICVTAVALELATVLLLLRKRVWRSYTLFFAYTTWLFLANSAILITSLYLPAEGQAINWAGRVYPALYWNIDSIDVVLRFVVVWEVFHQVFPKSSGLNKSLSKGLAIVAFALLVVASATFWGYQTNTGLRSLHLALDRSFGFIQALMILGTLLMARYYGVSCGRNIRGIALAFGGWVSISTATNALADLNSSFVAYWYYLRPLTFVFMIAVWIWALWVYEPNPPIRESEAVELNRWTQDWNRTISAARTIIRP
Ga0210394_100124409F014286GGAMINLILFAILGLALFGSFIFIALQGSPKNLPDSSAVRAVTSIINLEGSSFANARRLLDDTDYQVLCSNPDLRRLAERHRNDRRQLALTWISLLQGDLITLWRFRRFLIQQGVPSSVKEELGTLQALVLSLVLINLIRLSIRTVGPFALPRATRQAGQLVDSMSKGAALVLGRIPAAGWAEIERGWVKSAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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