Scaffold Ga0210394_10002438

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10002438
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25546
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004702	Metagenome / Metatranscriptome	427	Y
F019512	Metagenome / Metatranscriptome	229	Y
F045234	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000243812	F004702	AGGAG	MNATSVRSALLVFALAVATLALGCGGGAEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKIEGDKIVARGDFGPMLPSPLVFTINKDGTIDGPRDSMIPRLERAK
Ga0210394_1000243813	F019512	AGGA	MRIYRVTSAIPLALALAMVLGPTGCGHSSSDSSADEGIPGLTSADREAQSAAVAELQRHWLKGPDGWTTAVVSGSPYAPDHFLRQCRALTIKAMVPQDLSQSDKLNGFEWVGRAEFQPTSCREGGGQTTLALNGMSNVVVNKQSGRWSQWVDFTPGPLRFAREKGRWQFEWDATYLRGTLPGPQDFANAGVR
Ga0210394_1000243818	F045234	GGAGG	MCPACLASAALLISGIMSTGGLTALAAKKLHAKNNANDRGSFDSQSHEDSKTKSAAHGKEQL