Scaffold Ga0210394_10001620

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10001620
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34881
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028926	Metagenome / Metatranscriptome	190	N
F043255	Metagenome	156	Y
F062584	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000162023	F062584	GGAG	MTEIDDPEVLRREIRTMLEKVTDRGSLIFYQWMVRRVLANYPIPGDVELRALHQAFIRMQAAFRAKKRPTKEDMELVAKWTEGDAESMGRALGRAVKFFREKRGMSRLQLAKKARLPVRAILAIERGRVFDLSPVIDNLTMGLSVEAGELTDKLLDFEKDDKSPTRKG
Ga0210394_1000162025	F043255	GGAGG	MKKTRKPKVVMVGNTPITPISAKEQREIKKRIEKRHAQLRKRYPEVHGKVVDFINHSVTDGTLYVSVRFKDKTDFSVRYSCGMFVVGADISDMSAGDLEIIREYMKPIPH
Ga0210394_1000162030	F028926	GAG	MRPSRETKSGPPFLLNSVDRFGRQIAPAVLSVSMEIGPRALAYAQNLIGDPALAMNYFEEAAASVSAAIEDKKVSGAPAIRNVAGYLFRTFIRMVDDAKHKQKSREESLKESGEARIPLTEEARVETAVLLNEVMEACDRASREVIVLRLEGFTWKEIGKQFDISSHAAEARFSKALDHARKMLKIRRRKG