Scaffold Ga0210394_10001407

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10001407
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38844
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000696	Metagenome / Metatranscriptome	931	Y
F017017	Metagenome / Metatranscriptome	243	Y
F032348	Metagenome	180	Y
F047834	Metagenome	149	Y
F072549	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000140718	F072549	GGAG	MACEIGDWLARVRQALRGRYVRLLEEELSRERAEVARLRDENRALLNSLLGTAGVPPIETPRPMASVPPVRRRSWPQIATAREIEAARQARADERRP
Ga0210394_1000140729	F047834	GAG	VERRLLLAGGINRYGEPMYRAVWGWSRLGWIGGKWTDRDAEGTLVREVVELRRVPKYTPHDRWHIERWLPPESYGSPRAWYAQTVELENGVSLPALGPYPERGEYEHCFTLGGPRGEFVQLTPTVAEYIARAIEFGRLASAAGRRRALDERERRADREYDAWAFEALGSGAPAFHGLPFATLLN
Ga0210394_1000140734	F000696	GGAGG	MPVVGSSAYNTAGQITSLVRSLLNDAAGNLFTDGVLLPYANAAYRKVQRALANVQSGTFLSDDVLLVVSAVTAVDPSAQVSITDATAPPNQLPVDLLVPLKLWERVNGSSDDFVEMTDLTNHGGLPSQPQDVNLEYWEWRADGIYFIGATQDTQIRVRYQKTYPDFVDATSPVLIRNAQEAIAYFTAAMASAARGAPQAERWDEAGADALEDLLVRATQREQHTGRRRRPYTWRQGYGPV
Ga0210394_1000140736	F017017	GGAG	MLNVPQLAQIKGRDPYLYESLKQVVGAVNAIGRATGVDPAGSIAAPASIGSVSVAAADGIFDLAITDNSPVRRGIFYFAESDTTPAFTAPHVYFLGSSRNLRVSLGNQTLYWRAYSQYIGSTPSPPVPFGSPPTAVTGGGSAGPPLQPSSGSGTATAQQGGSGFGVDQTLTLNDTLP
Ga0210394_1000140737	F032348	GGAG	VTELGALEMIVRPYTDADLEALRAMHSAQGFSYALPDPADPLLLVREVVEEQGRPRMAALLRLTAEAYLLADPGDGAPRERWQWLAALHEAAHRAAAARGLADVQAFLPPRVARAFGRRLAQLGWRRDPWPCYAKIL