NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10001214

Scaffold Ga0210394_10001214


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10001214 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42859
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (71.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032348Metagenome180Y
F054195Metagenome140Y
F072549Metagenome121Y
F080266Metagenome / Metatranscriptome115Y
F094262Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100012142F094262GGAGMPAYNNAFPPIGIWPGDTCQVWNAEQPAPGNGGASASQRVALGERDGAPAGFSVTGFFSAPPGAFEIDVQVSDVDVDSQYQTCLNGNITVVDATNQTFHYDGATVLATFVRLLMRSRTNAVNVTADIRRL
Ga0210394_1000121422F032348N/AMQVHAYTDADLESLRAMHAGQGFGYALPDLADPLFLVRSVVEEDGRPRMAAFLRLTAEAYLLADPLEGSPRQRWRWLLALHEAVRQEAAARGLADVQAFLPPRVARAFGRRLTALGWRRDPWTCYTRQL
Ga0210394_1000121431F054195N/AMNPYWLIVAFTLLTQLCVFFRWLHRRLRDASIERAFIRDVALNHLPHIYHALRRIAAHQGVEIDDPPPVYFPELNGAQPKSDPHAR
Ga0210394_1000121444F080266GGAMESPKPTDTWSKELAGGTLTFTTQALGNPAAAYVYEAKFERGTSSYSMSRQGTEPLTRAEVETRFADFISEIRHGQ
Ga0210394_100012148F072549GAGMFDKIMDWLGRLRQGMRSRYVRELEAEIARERAEIERLRTENRAMLNSLLGTAGVAPIEAPPPHPAQIAPIRRRSWSQIAAAREIAAGREMVSGERS
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