Scaffold Ga0210394_10001187

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10001187
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43476
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (90.74%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y
F010268	Metagenome / Metatranscriptome	306	Y
F026653	Metagenome / Metatranscriptome	197	Y
F036872	Metagenome / Metatranscriptome	169	Y
F055974	Metagenome / Metatranscriptome	138	Y
F072557	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_100011872	F036872	GGAG	MKNAHLRFGWLTYVKSTEKTTTSINLRLDRFIGEVLPDPPRQARAHLISVVGGDTQISAVSAAISLGDRFMVEGPGVQPIRVCLERNAQCFKGSIQLAGRKKPLRHLIGMSEEFASGNMSAGAGRTLLAGSDKRFVWASIAHIYGIPGIPEWANWFADELDTHRAVIHALGIGCDPVIVKGEKEQFLDWLSWGVESGAIPFPTQTGSIRWPGVSLEEIFPQGE
Ga0210394_1000118725	F055974	GGAGG	VFTKTKQGALVVCLFLFLFVVIGGGLHLNPGGALLAAATGTPLAIHFFNRRWAGRGVEHNPPPSSRSPGSARSVAEAHAETEAFVRQ
Ga0210394_1000118734	F026653	AGGA	VLRRLEAFVFFFAMMLAVTLEGACVYWMCGHPRPYATTEGSLNFVGQWTGLALPQGWLLGALLVLIYRVTAMFIPPRRWTDNGFLQNRQAFLRLWRWTMALVAMQGLTLFLGRAAAAL
Ga0210394_1000118735	F072557	GGAGG	MMLRDDLRKRPDLGFRRTVADHLLEPPNPFDSNSVRRPQRWFVFFSIVSSAAVGAVVYFNFWN
Ga0210394_1000118739	F010268	GAGG	MATMIASPPDEKTSQANSRLAGKGNRRARPAGEDETMSGARFFLPKSGANGHAPELGREFSNEGEARVEALKLGMTYYSLQEWRPVADFAGKNPELKREPVTGKGTG
Ga0210394_100011875	F007596	GAGG	MSLRIRFRFDGKCSLHSRYDPARDGRPQHSNCEGCESLYVIHLYTKIAKRRAENENGILLRTSSGREERRASDEPGQFPNAENK
Ga0210394_100011876	F000208	GAGG	MRIRVTTRADLYEERKQQHIQRGYRIEDERPIPVNGFCSFIAMREMPVSDTVDELVALAINGGRGSHRYW
Ga0210394_100011877	F002560	AGGAGG	MVEHNPPPHADRVPLIPLPIALYISDGLVFELYDGGQPRRRFSIRWERLVPTKESEPEVASESPRTVSGIHKE