Scaffold Ga0210394_10000781

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000781
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59276
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (76.56%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F007488	Metagenome / Metatranscriptome	350	Y
F009917	Metagenome	311	Y
F015120	Metagenome / Metatranscriptome	257	Y
F106044	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000078110	F009917	AGGA	MGTSGWTYVVVVFSLGAQSVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAEKQGIHLEDQPMVNYVDMRNGGRNR
Ga0210394_1000078112	F007488	N/A	MRIRAYEESDLEALRAIHARQGFGYAFPDLGDPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPAIAQKFGKRLTRLGWVRDDEWTPYCKKLS
Ga0210394_1000078113	F106044	AGGAG	MPNLTSNAIWDFNPGDTVTLNAAFTFDLQDPNDNQTVSGVLTTLQGRTPHVTLTQTDNATISVVVTI
Ga0210394_1000078114	F000781	AGGA	MLTVAQLAPLKDRDPYLYETLVKIVSAVNATSANAGVDPANPSPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVSFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0210394_1000078121	F000739	AGG	MLANRVEVWLKGLLAAGVSGAAGGVMTGLASVGIDPGHFNLSAGMGATVRIGAAAALINAVIGVAAYLQKSPLPEQ
Ga0210394_1000078122	F000512	N/A	MIQVIRETHETPESVARRLCLAGGMNRYGEANYRVVWGWNRLGWIGGKFEDRDERGDLIREVVELRWEPKYPQVNRWHVERWVAPEAYGSPRAWYAQTVERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTSTIAEHVARAIEWARGRDRAMQRAKLYEREAREERAYEEWAFAVMDHGTPAFHGAPMVAG
Ga0210394_1000078127	F015120	GAGG	MFEILKKAFTTRYVGMLEGEVARLRMENRALMNSLLGTAGFPPVEFAEAVKPVELPRMRRRSWQQIQKLRESEATKA
Ga0210394_1000078129	F000885	AGGAGG	MTNAKVVFIGEISQIAGVASVVGGVVLSLRHWPAAMALVGGLAAYFVGKKLRGQ
Ga0210394_1000078134	F000188	GGAGG	MSVKPEMAFDVCWEVYRGAREVMESKRGIAALNVEMETKYEWRPDVRPKMKDWVADFALAGQAALEGPEWASRMVLFRLYYLGLAPYERARHFLGLSERGWVNWSEEIRRRCGAEILRRGMFPPRKYFSGRD