Scaffold Ga0210394_10000414

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000414
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93020
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003741	Metagenome / Metatranscriptome	471	Y
F015305	Metagenome / Metatranscriptome	255	Y
F022049	Metagenome / Metatranscriptome	216	Y
F090743	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000041430	F003741	AGGAGG	MLQQVNQTEARDLEWSCQAVSPMDEPCDSTASFHCGICGRWFCAAHVKDENWHTCNLEPGDEGGEA
Ga0210394_1000041441	F090743	GGA	MVELQAFQTAARESGFITAEESSDGTVLWFRKVTPDASTGTHQRLCLDSMTKSATVYWTNARGLTESKTFRNVAAWREWTGGIAVAAG
Ga0210394_1000041447	F022049	GGGGG	MATPIRYQIRCEKDGASVKASYDLQVPVGGAALIASFTLGVDGKELIDQTKWIPGQVRYNGTQFTELDHPDKDVTVAFSISSNEGWTAADSDILRGDKRFDDVSFRDS
Ga0210394_1000041454	F015305	GAGG	MFSAALLSIAVVAMGQFAVYYWRAVFTGMASLPISSRVLEAAQVQEESICGNDFEKFASLLTLTPELKESKGGLGMVRAYYALVQRVETVFASFSPMMANWAEKERMLCARIAAVHIDRRLESNLMQAASIRSL