Scaffold Ga0210394_10000386

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000386
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97043
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (88.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000391	Metagenome / Metatranscriptome	1196	Y
F000850	Metagenome / Metatranscriptome	861	Y
F011898	Metagenome / Metatranscriptome	286	Y
F097736	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000038621	F000850	AGG	MTKPELTDVGWLGPKDEMDRASHHFGRCSVCHELICVEKAVTDGPSTLRQTSERLFEAFRKHAGLEHGDCA
Ga0210394_1000038624	F011898	GGAG	MVLGNMRLRLESGDGSPTNEYRVEDGNVEVRTLDPEGVSVRRTSVWLRLTPGQLSNHVERNTVVAQWLERRLGWRRLLQACVAQEPNPWKVADSTNHPAL
Ga0210394_1000038635	F000391	AGGCGG	MSPETQQSESPYCVRVETETGQSSIVPIAVLTPKQLEVFLQSEFKRLAQEAGVKGARIHVERATVADYEHLLREVAACLSSAKARAA
Ga0210394_100003865	F097736	AGGA	MLLDKLSQGVLRVLTPLGPRYVNPSLLQRLYLLWIFRNFHTLPLKVLRRRQQRRIDRMCLKRGFVSLPERNGLEETPVLGTLEQRPPMETSLPPRRASQGVSQAVGRFAADIRQRS