Scaffold Ga0210394_10000306

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000306
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112767
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (72.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018819	Metagenome / Metatranscriptome	233	Y
F028918	Metagenome / Metatranscriptome	190	Y
F047269	Metagenome / Metatranscriptome	150	Y
F052777	Metagenome / Metatranscriptome	142	N
F053414	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000306102	F052777	GGA	MASASAIASEGTLRIHRSIAGTSAPFRVTYQAYQDGDEPAPAAERSFHHLQDVRTFLNV
Ga0210394_1000030616	F047269	GGA	MLSLKEVVDRYSSLAKQWGDPVALEAFALDTEETVKLFTSLDEDYHISRFVNFSFDHGRLYLISGNPSTHIRIDAAIRELL
Ga0210394_1000030633	F028918	GAGG	MHYRPQIRRLAACILALATALLPAAAQPNRDKNTWSYDGGIFMDTEGEIPGGACFRVKGHVTAADFFENLKREDTNSGSLFRRGNDLVTDFPKTLHLSLSIADTPCDPHMQQTNSRVYLTEEMIRTLRLHFFWKRALELRPVRGVTETGGEVRPVPWYSHGLEQELPKRFEWLVEFDVPSEGVPLTDNLVLMMYTPEHRLIARGAARM
Ga0210394_1000030655	F018819	AGGTGG	MNDFSPLPIKDWYALGSLIAEIGFLVAAVWFARSFLRTMRAFQEQIGALLKLSITSTPGERQSTNTTARSALAEGSPYWLPPSPSTSVDARANPPEEFERGPNLFVAGWQRLVHWLREPMGGSRVSYRRRMMNWLQAPVGH
Ga0210394_1000030666	F053414	GGAGG	MHVLRGVLALSLCVSLFAYNLSLCAGGKALGILTLAYGAHLNASAAFAGLSVFDGERVSTDAGGKIGVRIGASVITLAEQSGATLQRNGDGSHVDLDAGSVYLWSAESNPLEVHVEGALLRPHGAHQAQAQILMFAPKILQITTRRGSVDFSYGKEFRVLPEGQTYRIYLESEDDPRGTTGAGSGTEKAGLSTGTKVAYFIVAGAGAGLAAWGIHDLIQSHNGVESPAKP