Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000192 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	146962
Total Scaffold Genes	134 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	97 (72.39%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

146962

Total Scaffold Genes

134 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

97 (72.39%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003591	Metagenome / Metatranscriptome	478	Y
F021622	Metagenome / Metatranscriptome	218	Y
F027914	Metagenome / Metatranscriptome	193	Y
F061705	Metagenome / Metatranscriptome	131	N
F069818	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000192125	F027914	N/A	MRGELSAMAASLLVLLSGELLKWQFPAMAAGEKLASLASALNVKIPQSALDLIRR
Ga0210394_1000019213	F069818	N/A	MLCKSQRVYYKQDAKRTNIGNMPEKSKRYFFLALLLGGILLTAQLHCCVDLNSRALDSHVCPICSAAGTAVPTPSLIVEMAPAINRLEVSGVVVFVPLVAPRSIAPRAPPAA
Ga0210394_1000019218	F061705	AGG	MKYKSLVLGAAGAAILFGAATAAARSYNPMKWIKKPTASQELAANSTEEKALTLQLQALLPAHTTLKDACTLFKTLDDCVASLRASSNLQIKFNCLKWNMTAVRPNGDIKSCQAPPKALSLEKAILALKPDVNARGEARNAEKSAHEDIKNARS
Ga0210394_1000019235	F021622	AGG	MPANFSPPGYRWFHFLRHASSRVGLYTGVWLSLVFVAWVVVANRAPFLEPLAQQRNFIAALLLALIAVMPVIRFLRSPAELLISGLLAWSLLTLTYRILSLEFTLLQFYYSSFHVFVLGAVAYLLFATVSWIGMIVWRAREAQGTHTSR
Ga0210394_1000019238	F003591	N/A	MKQVILSILTTLMIVATTLSAMVILVRATLYVTSIESPLPRAGAILAEILLGVVLLLGTVWLATHAAVLIFAPKSDEPEGGPLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000192

Overview

Ecosystem & Geography

Associated Families

Sequences