Scaffold Ga0210394

Basic Information
Taxon OID	3300021420 Open in IMG/M
Scaffold ID	Ga0210394_10000165 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	159579
Total Scaffold Genes	149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	118 (79.19%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

159579

Total Scaffold Genes

149 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

118 (79.19%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Massachusetts

Coordinates

Lat. (^o)

42.481016

Long. (^o)

-72.178343

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F002518	Metagenome / Metatranscriptome	552	Y
F006297	Metagenome / Metatranscriptome	376	Y
F020961	Metagenome / Metatranscriptome	221	Y
F057647	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000165142	F057647	AGGA	MQVLTSVEVAEWFKGFGDFKPESDYVHADEDGLFFTNPEASCIDLEYPAKLERFPFFARCVATIGYEEQHFDGALLWLHHWGVWTLFNEGIGCRIVERINAGAGQPKSFEVARGHRFRADELPDAIGMLMQPMIFAWDSFYLPTWSYGTGDFFLHISHHSIVCVVTRTRAFHDRVFRQLQELDLNPRLANDDRVKRFCHPKAASS
Ga0210394_1000016528	F000262	GGA	MTALLGILAAGCNGGSYGVLQPNPEDLCKCLPIEPDILDFRHLAKHVPIPAVAAEELGVDTILSWTQDAFVDPSAPRTGRELQLFHIANAFLQEASVNGADCDVHFEISQTADKSASRVIVETPVDSEYCTARQNAQSQLAKRGFKLDSQHGGELPLALPVEVFGLAFEDFDHNRGSAQVATIWELHPATVNLLP
Ga0210394_1000016529	F002518	GAGG	MDNACKCPVSGKRKYPSEGAALATAKHQLTTAGAPMELHAYRCNWCNAWHLTKKTGKFDRDR
Ga0210394_1000016544	F020961	GGAG	MNCEEFAITGMDRDLDTGGLDSAAVFEHLRSCPDCAALYESSLVLRADLRELGQLTSEGTAPSRVEMRLRQEFRTRHTTEKSHGRAVLASWLLAAAALVLVATSLAFWQRHGVVNTAKEQRPFPTPTTIHSVATGPELGGTLIAENDGDEFALIPGAVPGMLDDTTVVRVQMERGSLGALGLSVNEEHANDVVQVDLLLGADGQPEAYRLPQSSN
Ga0210394_1000016582	F006297	N/A	MIRPTKKTERGPEPQIGQPASSGEGWLGHNRSEKRRLWERLNPRHRKELRMLAEALALKQNHARLPEAARGRLDAALGELDRVIRRIAAILAELARRTPPPG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0210394_10000165

Overview

Ecosystem & Geography

Associated Families

Sequences