Scaffold Ga0210394_10000156

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000156
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 163240
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (82.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023662	Metagenome / Metatranscriptome	209	Y
F036396	Metagenome / Metatranscriptome	170	Y
F036857	Metagenome / Metatranscriptome	169	Y
F036945	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000156117	F036396	AGCAG	MASYAQFLGRKVTVQYRVGDVLLPASGTFAADSGRSIFLEQHVEQRGKRSYFRWEIPYQYIHRIEEAGEIQEPPETPKIVPPEPGISQASAASAGTSLSPSAASLLSLPQRPKTV
Ga0210394_10000156118	F036945	N/A	VRVPWSATLAHSYEITCPACHAPLELSRFTRIFGAFGGIAGAFVALHLGQEIFHSWFWAMPIVVAILGFGFASALCVLIAGDLVVRPKPAAASFPHPAK
Ga0210394_1000015644	F023662	GGAGG	MRFRTAVSIATFFLLCFAISLWSVPVPAEMGPLRNPPEPSSVSGTIANVNTSQFTLSLNRNQNPNKLEFVIDSNTKIEGKLAIGSQATVDYRAEGQQLVATHVVVLPASGIQLY
Ga0210394_1000015658	F036857	GGAGG	MSRKLGALALALGILVGAMELKTLVTAHSNSVVIMANGVSPLPKLPPPSN