Basic Information | |
---|---|
Taxon OID | 3300021420 Open in IMG/M |
Scaffold ID | Ga0210394_10000153 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 164735 |
Total Scaffold Genes | 151 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 107 (70.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F035409 | Metagenome / Metatranscriptome | 172 | Y |
F046499 | Metagenome / Metatranscriptome | 151 | Y |
F059752 | Metagenome / Metatranscriptome | 133 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0210394_10000153101 | F046499 | AGAAG | MRQKLHIIFIAAFTVLAIAVLNAAASPAGETYKQNEQGLEKQFEGFLKAYQRGDDKGMDESFGVFRLPKAKEWFGEHFSAEDAAKLVAAYDREMSEAEASLIEDMNKADPGSRFRVRCEARGDSGAGQGSTGGYGFKPVKPIAVEQFRLEFRSGSHDQKFSFIANFVYVDGAYRFVGGGGVAFWAKPGAGR |
Ga0210394_1000015374 | F059752 | GAGG | MASQSFQPRIRKSLTLSLTWVLTTGLFIITVENIWLDPWLRSRYPDFPSLAPQPPSILWIISFAGIGIVCVVLMVGQVLLMRRDGVSRNSRIFAGVSVIMALLLSVTWFLVTSGITAAPHLSL |
Ga0210394_1000015383 | F035409 | AGGAGG | MRKFAIPGMLIAVAMLSVGIWAAAQDKPEVVEVTGILVKVSAVGTDTTGWEIHLPNEMNIGGKMTKAVEVDGDPHKFQKLENLRITVKGYLMRPSENRIVIKVQKIKE |
⦗Top⦘ |