Scaffold Ga0210394_10000133

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000133
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 179923
• Total Scaffold Genes: 164
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (85.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F017187	Metagenome / Metatranscriptome	242	Y
F021344	Metagenome / Metatranscriptome	219	Y
F023670	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000133139	F021344	GAG	MVKRKKDRLEKGTEARRRARKSGLAPAGTRIIPDKRGKPAKHKPDLLREVD
Ga0210394_1000013331	F017187	GGAGG	MQLSKRYAERFLIVAGMGLLALACAPNGRAQSDDVAGQYVCSEARVAGKAVTCTAPPLSLKTDGKFELQGREGEYLVSGNWVELNGTVLKSRAKREAGHKIVFRFTNSKGACEMIYERRVAEMGKTKLG
Ga0210394_1000013359	F023670	GGAG	MPTDETKRAAQEFLAAQFTEAVQIEEERLNNQAAVALAPKVWKRVAETFQAQCEAWNAITKTESLTCKETILGDLRIRCAGKPDIITVHYDSKKLQVILRNTARPEHEGDSTFFIHGYNGGTEADLSRNNQRANLEVVVLGELRVLAGIGRTAK
Ga0210394_1000013380	F000552	GAGG	MEAMRRKLVWSERKNFQGWVCTECAWKFNPFGPVVGQSLEEMKSRYEKQRDAEFRSHVCAEHPRVTKNPS