Scaffold Ga0210394_10000117

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000117
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 193792
• Total Scaffold Genes: 156
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 128 (82.05%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000438	Metagenome / Metatranscriptome	1143	Y
F022248	Metagenome / Metatranscriptome	215	Y
F025326	Metagenome / Metatranscriptome	202	Y
F026812	Metagenome / Metatranscriptome	196	Y
F047281	Metagenome / Metatranscriptome	150	N
F050161	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000117111	F025326	GGAGG	MSLTMQQKRRLFWALGILIMLTLSSVAWAQINAALTHCFSLF
Ga0210394_10000117118	F050161	AGGCGG	MRCGGASVQFFGKTCRKLLSKNLLFPWALILIAVLAAICCVFRPVAADGDAALRETAQRLAERVAAIPGLHGPLRLEWHPDATWSEGESQRWIEKIRDELERRALDLTGEAGAPVLDVFAVETPTQVVLTAKTLVSDRDEVRIMAFGRALLPRAASPAAPIQLERQRIYESPDRILDASSVQNGDERGLVLLVYRNYELMALRVDARGVVKQSVSLNPANWKPSRDPRGEIRMRGSVVSVELPGKTCEFSWESPADLKCRAEKSAWRAEALLTSPCDRSDWKLVSSGSEPNAKDVLQVLPDGTLRESSAAVLSEFPGPILSNNGEQDPSSALVIARNLRTGNYEVYKITLACGN
Ga0210394_10000117119	F026812	GAG	MVAAFVVWAIVIGAGVAQAQAPSCADLRTQKGKVYGFHLTQLDETQIDAKSKEIDAYWKLLQGTGPEGVSCLKEMLAAEKTDHIFQFDAASFLFQLDKSPESLNLVKDAIVQTDFQETDPANYLSLALDLGQRGVNIQSLAARLLLFPNAIIHISEHSLDLDSDTAALFLYGSMDSRKASKALIAQLQAQEPFVRAAAAHLLAEEMTEEAFRTLSTWSGLTDVKEDYRRNDIQAVMKYQAPDPAEFANPKWTREQVLQIIAGLPHTRKEFDDAMSTRGAEFDKQMREKKPSQEELAKAVAESEPIYGISDRTSFQNSAVATLKAEDFDTLREARRKALYNISDESLSEYLAYTQVMIRLLNRLDLYKDYRAH
Ga0210394_10000117122	F022248	GGAG	METMLGFAGVVVITMLALFAALALQTALLHLTLRLMQPATADRRPMRVGVAHGTRMVARAFQLQR
Ga0210394_1000011746	F047281	AGG	MNEVTRRITEEILVRANEAIGRGEAKGPKLDQCWKRFEKLNGGIVGPKSWEQIKRIAEASLAEGKEPGA
Ga0210394_1000011779	F000438	GGA	MDKFEEIGKRLDEELTRLRKYLEEEVAPATEKRTAQALREAAEKLSEAARKLEARVATRGSQASTDTKS