Scaffold Ga0210394_10000093

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000093
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 218102
• Total Scaffold Genes: 203
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 146 (71.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F001986	Metagenome / Metatranscriptome	608	Y
F019865	Metagenome / Metatranscriptome	227	Y
F023916	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_10000093137	F023916	GAG	MLSPARLTQLLTEFIFLLLGALVMWLAANGRIYFDRHGVSWLVLSVALIAWGLLALAKPGLFRAKWQKWNRGGSLVLLGIAMLSISRVPFDWVVKLLAAAGLILLVRGILGSLLILWQR
Ga0210394_10000093167	F001986	N/A	MRYNVFAQRGGAAYGVLVCSVCNKSVTFELEHQVDVSTYGEGSRVLSMLGSPRPPTVERKKPDGDAELDEKTL
Ga0210394_100000934	F019865	AGGGGG	MAALWLVALLLGTGFAIATEPGAKWKILNVAIILGCMGLGLGLGYAIGLGSKNFGVVPNAAIPFSMMFGVLGAMVCVARNTWSAKS
Ga0210394_100000936	F000552	GAGG	MRRKLEWVETKNFQGWVCTECAWAFNPSGPLVGQSIDEMKKRYEKQRDLEFTSHVCAEHPRTTKNPC