Scaffold Ga0210394_10000086

Overview

Basic Information

• Taxon OID: 3300021420
• Scaffold ID: Ga0210394_10000086
• Source Dataset Name: Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 226010
• Total Scaffold Genes: 193
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (82.38%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.481016
  • Long. (^o): -72.178343

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001463	Metagenome / Metatranscriptome	690	Y
F006297	Metagenome / Metatranscriptome	376	Y
F015633	Metagenome / Metatranscriptome	253	Y
F031163	Metagenome / Metatranscriptome	183	Y
F038452	Metagenome / Metatranscriptome	166	Y
F066048	Metagenome / Metatranscriptome	127	Y
F066203	Metagenome / Metatranscriptome	127	Y
F094982	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210394_1000008610	F066048	AGGAGG	MQKDERDLLEVLIFDEIEDTVGTWLRAIIQRLEKEQTAMRRDLHRQPTPIGKTLRGALLCQKRHSNSAKPACPAALDRPREVLPISGRSGFGKLV
Ga0210394_10000086169	F006297	N/A	MIRNAQKMEHAPEPQNGQPAASGEGWLGRNRSEKRRLWERLNPRHRKELRMLAEALALQQNHARLPEAARGRLDAALAELDRVIRRIAAILAELARRTPPAG
Ga0210394_1000008625	F094982	GGAGG	MISRSDGRNFHLLLADRPLPYPVERHKGRTLKASACFWYLYGTGSSAAKSTVVLFECAFGGKANIYRQIESIADVLAEELVRRQSLAVFYNMQGERILELAY
Ga0210394_1000008640	F001463	AGAAGG	MMFLALADKTMSNVNKKPPLIEDLREHSQEQIAELRLLLEAGLTGRPDPRRPGFFELDGVANVYYVFRYPTGHKVLLLAAWQREVDPVAEMAAYSCPAA
Ga0210394_1000008641	F031163	AGGAGG	VPVIGISIRLPLRLAALSCSIVLLPLCAQELKENQGQKQLRPHTDSIREPFDFSLTPGAHDFHTDLMPGGVQSYILPRPRSDSATFEKPLWTSSTGTIQRMESAFYCNDTPFVDQVRLPLATFWRGRVKLIGFESDVTTANFVMGLPGQGALHNLSAFGGNGFLAVHTPPSDQLAGINMTFSWHGNESESGDSSGLHGIEHLVHASRGFLPLFSGRSDSSSVALR
Ga0210394_1000008668	F038452	GGAG	MSLPAILLVLFALLLVGLLAWALRPPPHPARPDVDVFDALRQSRHSSRLPHILQALLPQDTEYLRETGQVALMRTLRQQRRRIALGYLDQLQEEFEMLLEISRVLAVMSPEVVGMEEIERWKLSVTFAASCAFLRWRLRLGLQPFAGFTLLSNMAADIARELDAATIRIAEATVRASKHSAFGNENIDVQ
Ga0210394_1000008669	F066203	N/A	MIEPLQLQAAAWALTTALELVLFALFLRRKLGRTYPAFFAYLLSVILQSLTVAALYRTPNLAKLTIWLIAWGTQGVVVLMRSLAIVELNRSVLRRYIGIWALARRLLVGVAVAVLAYDLALSKGNWQWLILNGIRGLELAMAAVIVTMLLFARYYRVQVNHLQRALAVGLCLYSAFYVINYSVLERIVQQYGVLWNFLGMFAFIASLLVWINGANQYAEAEEAAVPPAIPPELYGKLSSEVNSRLILLNRHLIQFLHVEHRSQ
Ga0210394_1000008684	F015633	GAGG	MKTAPAARICFRKVKSALLASPRVLGTVLVLLLLPCLAAAQAEPPKKVTWKSVEFAIVRFNDQAPNSWSIYHSEKKGVLLVRLWKRYMLVKIQDEEVYDIDPQKITVHGDSAEWSYADIPDKPIEIVEWKERNIGSMQRVTFRFGKNGHVMELQIPLGLNREPMY