NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210394_10000078

Scaffold Ga0210394_10000078


Overview

Basic Information
Taxon OID3300021420 Open in IMG/M
Scaffold IDGa0210394_10000078 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)232774
Total Scaffold Genes207 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)164 (79.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000549Metagenome / Metatranscriptome1036Y
F017859Metagenome / Metatranscriptome238Y
F024185Metagenome / Metatranscriptome207Y
F035029Metagenome / Metatranscriptome173Y
F051723Metagenome / Metatranscriptome143Y
F075738Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210394_100000781F017859AGGAGMNRTQTETQAMDTSVAELALRELQERIEASGLESSYSELVCDLCVGQVSLEKAFGEIHQKAMERMVELLDTRILGDEIALDACLEKIARESERVAWNALEQGTEALREGLAILEGAETLGDGGYVN
Ga0210394_10000078112F000549GAGGVQPQPQKKRGRAYRIDGSIVLYRLAARRQFKAERSAVGSEPWWGAVLGIPLFLRTLLRLVIACPHRHKGPPITLRESTPSHLPGRSDRYRGTYVTCLDCGQKFAYNHKTRRLVDFWGIHDAVARAEIRRKVAESFSVLRGFAAWIGRINLRIPRSGLIRSMPRHGIASPFVKSQDH
Ga0210394_10000078134F075738GGAGLGKPGRILVGKKEIALAGGIKAALDEAHAAASMRMTPRAITAYEAVGSTPSEEDGVEMMVQIVVRDEEELREAIGAGAEAVLLEGVSTEEGRRLGEIARGLRADCLVEVSGEKP
Ga0210394_10000078150F024185AGGMQTVYYSLMKKLLAVVVVVFLGIVAGRAAVAQQNKPLRTSILDAHEGVTIGVEPWTQASRYKEKFPKKNPFAAGIVALRLSIRNDNDEAVKLNLHRIQLLVQLDADNKQELEALTADDVADAVMLRQNGKDPTARRLPIPLPISRPKPTRDKNWEEFHGDCQNAGIPSGVIGAHSTMEGLVYFDLRGEWDLLQTARLYVPDLQRMTSQQAISYFDIDFSRGPEN
Ga0210394_10000078161F035029GAGGLPRHGEQARLLLALALAGLAGCHGIGRTDDPQLKPIQTMLEQQLPPRTPEEQVVTYLDNHGYPILAAKKQGTIVANIRRTDTAAVQPVVARVTFYFDANRKLNTFELQRPVNEPHRR
Ga0210394_1000007849F051723GGAGGMSLSPKHLLFGAALVFASSPLFANESAATSGIAAMPRAYVNCPGISNVPMTSDAEQSLPMRQIATLSCGQQVAVLADNEGYTAHIRTTDGKDGYVARMYLTTATPAAQPAREFDEPAPVINATPVNGIVRWNAGAPGCDQFTSRGRKVESATANGVTVQVALQDTGWKLHASVAVSNGSNTEVFVLPALVTLDELTPSLRNLREENPSKLAHNEVNHQLMHSEYIAVPPPSAIVLHKRSAPQVATVADHATSVDDYLSFNDETSSVRAVALKTANLAPGEKTSGELWYVRDAKAHELSLRISVGDLVFDFPFSFE
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